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bio-ecological-genomics-biodiversity-metrics
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Calculates species richness, diversity, and turnover using the Hill number framework with iNEXT coverage-based rarefaction/extrapolation, asymptotic diversity estimation, and beta diversity partitioning (betapart turnover vs nestedness). Compares assemblages using coverage-standardized rather than size-standardized rarefaction. Use when quantifying biodiversity from species abundance or incidence data, comparing diversity across sites, or constructing rarefaction curves. Not for clinical 16S microbiome alpha/beta diversity (see microbiome/diversity-analysis).
By tools-only schedule Updated 2/14/2026 Install via CLI
npx skills add https://github.com/tools-only/X-Skills --skill bio-ecological-genomics-biodiversity-metrics
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