381,784 Collected SKILL.md files

Explore AI Agent Skills & Claude Prompts

Discover open-source agent skills for Claude Code, Codex, ChatGPT, and any tool that uses SKILL.md.

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zoologists and wildlife biologists
Showing 12 of 161 skills
zjunlp

scienceworld-animal-identifier

by zjunlp
star 1.0k

Use when the agent needs to locate, identify, and focus on a specific animal or biological entity in the ScienceWorld environment. This skill handles tasks involving animal comparison, examination, or interaction (such as determining lifespan extremes) by navigating to the correct location with "teleport to", surveying with "look around", and executing "focus on ANIMAL" with the exact entity name.

navigation main article SKILL.md
schedule Updated 3 months ago
zjunlp

scienceworld-living-entity-identifier

by zjunlp
star 1.0k

Analyzes room observations to identify potential living things (e.g., eggs, plants, animals) among listed objects. Use this skill when a task involves finding, focusing on, or interacting with a living thing, biological entity, or organism. Processes observation text, flags candidate living items based on domain knowledge, and outputs a focused target for subsequent actions like focus on or pick up.

navigation main article SKILL.md
schedule Updated 3 months ago
SpectrAI-Initiative

mouse-model-analysis

by SpectrAI-Initiative
star 379

Mouse Model Disease Analysis - Analyze mouse disease models: MouseMine search, NCBI mouse gene data, Ensembl cross-species comparison, and orthologs. Use this skill for model organisms tasks involving mousemine search get gene metadata by gene name get homology symbol get gene orthologs. Combines 4 tools from 3 SCP server(s).

navigation main article SKILL.md
schedule Updated 2 months ago
SpectrAI-Initiative

organism-classification

by SpectrAI-Initiative
star 379

Organism Classification & Database - Classify organism: NCBI taxonomy, Ensembl taxonomy, ChEMBL organisms, and genome info. Use this skill for taxonomy tasks involving get taxonomy get taxonomy id get organism by id get genome dataset report by taxon. Combines 4 tools from 3 SCP server(s).

navigation main article SKILL.md
schedule Updated 2 months ago
aiskillstore

biogeobears

by aiskillstore
star 360

Set up and execute phylogenetic biogeographic analyses using BioGeoBEARS in R. Use when users request biogeographic reconstruction, ancestral range estimation, or want to analyze species distributions on phylogenies. Handles input file validation, data reformatting, RMarkdown workflow generation, and result visualization.

navigation main article SKILL.md
schedule Updated 5 months ago
wentorai

conservation-biology-guide

by wentorai
star 237

Apply conservation biology methods, databases, and assessment tools

navigation main article SKILL.md
schedule Updated 3 months ago
wentorai

inaturalist-api

by wentorai
star 237

Citizen science platform API for biodiversity observations

navigation main article SKILL.md
schedule Updated 3 months ago
wentorai

ecology-skills

by wentorai
star 237

5 ecology & environmental science skills. Trigger: biodiversity surveys, species data, environmental monitoring. Design: field data collection, spatial analysis, and conservation biology workflows.

navigation main article SKILL.md
schedule Updated 3 months ago
taomiao

scienceworld-target-locator

by taomiao
star 128

This skill determines the most likely location for a target object based on domain knowledge and environmental clues. Trigger this when the agent needs to find a specific item (like an animal) but it is not in the current room. It analyzes the environment description and suggests a room to teleport to for further investigation.

navigation main article SKILL.md
schedule Updated 3 months ago
Tibsfox

ecosystem-dynamics

by Tibsfox
star 65

Ecological organization, energy flow, food webs, biodiversity, succession, and species interactions. Covers trophic structure, primary productivity, nutrient transfer efficiency, keystone and foundation species, ecosystem services, carrying capacity, disturbance regimes, primary and secondary succession, and resilience metrics. Use when analyzing how living communities are organized, how energy and matter move through ecosystems, how disturbance and recovery shape landscapes, or why biodiversity matters for ecosystem function.

navigation main article SKILL.md
schedule Updated 2 months ago
Tibsfox

bird-observation

by Tibsfox
star 65

Birding by sight and sound — gestalt, song and call vocabulary, behavioral and habitat clues, and the discipline of producing eBird-grade records. Covers the vocabulary of bird field marks, the primary categories of vocalization, the habits of habitat-filtering, and the protocol for submitting records to a citizen-science database without degrading data quality. Use when the task is bird-specific observation or record-keeping.

navigation main article SKILL.md
schedule Updated 2 months ago
Tibsfox

field-identification

by Tibsfox
star 65

Identifying species in the field using dichotomous keys, gestalt recognition, diagnostic features, and habitat context. Covers the working identification protocol from first encounter through confidence-rated record, the vocabulary of field marks, the discipline of negative evidence, and the honest reporting of uncertain IDs. Use when the task is to name a living organism encountered in the field.

navigation main article SKILL.md
schedule Updated 2 months ago
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Browse Agent Skills by Occupation

23 major groups · 867 SOC occupations

Browse by Category

Explore agent skills organized by their primary use case

SKILLMD / CREATORS AND OCCUPATION CATEGORIES

Explore the agent skills ecosystem by occupation and creator

SkillMD is not just a keyword search box. It is an open map that organizes public skills by occupation, creator, and repository, helping you see which workflows, judgment criteria, and domain habits people are writing for AI agents.

Then follow creators and GitHub repositories back to the source: compare the skills a team maintains, whether the repo is active, and how the README frames the work before you open, install, or reuse anything.

Use it three ways: learn an unfamiliar field by occupation, study how creators organize skills, then use source context to decide what is worth opening or reusing.

01 Map a field

Browse 23 occupation groups and 867 SOC roles to learn what skills exist in adjacent domains and how they break down real work.

02 Follow creators

Use creator and repository pages to inspect maintained skill collections, recent updates, and source context before trusting a result.

03 Search with sources

Search 1.7M+ collected skills, then use occupation tags, creators, and GitHub source context to decide what is worth opening.

Start with the occupation map, then follow creators and repositories back to real code. SkillMD helps explain why a skill is worth opening, not only what it is named.

SEO KNOWLEDGE HUB & TECHNICAL OVERVIEW

Standardizing Agent Capabilities with SKILL.md and Model Context Protocol (MCP)

In the rapidly evolving landscape of artificial intelligence, LLM agents (Large Language Model agents) have transitioned from simple text predictors to autonomous problem solvers. To orchestrate complex, multi-step agentic workflows, developers require a standardized format to specify agent capabilities, prompt instructions, system rules, and database bindings. This is where SKILL.md and the Model Context Protocol (MCP) have emerged as standard developer paradigms. SkillMD serves as the central directory for indexing, exploring, and sharing these critical agent configurations.

Our open-source registry currently tracks over 1.7 million collected SKILL.md configurations and system prompts. By compiling agent configurations from active developers on GitHub, we bridge the gap between prompt engineering research and production execution. Whether you are building agents with Anthropic's Claude Code, OpenAI's GPT-4, Google's Gemini, or local models using Ollama and LlamaIndex, standardized skill definitions ensure your agents behave predictably across different runtime environments.

What is the Model Context Protocol (MCP)?

The Model Context Protocol (MCP) is an open-source standard designed to connect LLMs to data sources, developer tools, and external environments. MCP establishes a bidirectional communication channel between client applications (like Cursor, Claude Desktop, or custom agent systems) and servers hosting data or capabilities. Standardizing instructions via SKILL.md enables LLMs to query databases, read local files, execute terminal commands, and integrate third-party APIs. SkillMD allows you to find ready-to-run MCP servers and prompt instructions for various occupations and technical tasks.

The Structure of a Professional SKILL.md File

A valid SKILL.md configuration is designed to be easily read by humans and parsed by LLMs. It contains precise system instructions, trigger conditions, required parameters, and execution examples. Below is the typical architectural blueprint of a professional agent skill:

  • Metadata & Core Scope: Declares the name of the skill, author details, target models, and a description of the capability.
  • Triggers & Intent Detection: Details semantic triggers that help the agent decide when to invoke this skill.
  • System Prompts: Explicit system-level instructions that direct the agent's behavior, personality, safety guardrails, and formatting preferences.
  • Capabilities & Tools: Lists the files, databases, or APIs the agent must access to complete the tasks.
  • Few-Shot Examples: Demonstrates real inputs and outputs, helping the model generalize behavior through in-context learning.

Optimizing Agent Workflows for Modern LLMs

Writing effective agent skills requires deep knowledge of prompt engineering. With the release of advanced reasoning models like Claude 3.5 Sonnet, ChatGPT o1, and DeepSeek-V3, prompt templates must focus on structured thinking. Developers are encouraged to use XML tags (e.g., <thought>, <context>, and <rules>) to isolate execution boundaries. Standardized prompts prevent agents from suffering from context drift, ensuring that long-running tasks remain aligned with the initial system parameters.

Exploring by SOC Occupations and Creator Profiles

What makes SkillMD unique is its taxonomy. Instead of simple text search, we parse and organize files according to the Standard Occupational Classification (SOC) system. This means you can discover skills written for Computer and Mathematical roles, Business and Financial operations, Legal, Design, and and Educational Instruction fields. By tracking creator profiles, developers can study how different teams organize their custom instructions, compare version updates, and fork public configs for specialized enterprise use cases.

SkillMD operates as a high-performance index running on a fast Go backend and a highly responsive Astro SSR frontend. All search queries execute in milliseconds, featuring smart debouncing to prevent multiple API requests while keeping user data secure. Join our community of developers to standardize your AI agent instructions and optimize your LLM prompting workflows today.

8 QUESTIONS

Frequently Asked Questions

A practical guide to agent skills: what they are, how to inspect them, and how SkillMD helps you explore the ecosystem.