bio-metagenomics-strain-tracking

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Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.

By tools-only schedule Updated 2/4/2026

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Install via CLI

npx skills add https://github.com/tools-only/X-Skills --skill bio-metagenomics-strain-tracking

Repository Details

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Occupations

Microbiologists