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bio-workflows-microbiome-pipeline
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End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2. Use when processing 16S/ITS amplicon data.
Install via CLI
npx skills add https://github.com/tools-only/X-Skills --skill bio-workflows-microbiome-pipeline
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