bio-metagenomics-kraken

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Taxonomic classification of metagenomic reads using Kraken2. Fast k-mer based classification against RefSeq database. Use when performing initial taxonomic classification of shotgun metagenomic reads before abundance estimation with Bracken.

By tools-only schedule Updated 2/14/2026

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Install via CLI

npx skills add https://github.com/tools-only/X-Skills --skill bio-metagenomics-kraken

Repository Details

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Occupations

Microbiologists