bio-workflows-metagenomics-pipeline

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End-to-end metagenomics workflow from FASTQ to taxonomic and functional profiles. Covers Kraken2 classification, Bracken abundance estimation, and HUMAnN functional profiling. Use when profiling metagenomic samples.

By tools-only schedule Updated 2/4/2026

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Install via CLI

npx skills add https://github.com/tools-only/X-Skills --skill bio-workflows-metagenomics-pipeline

Repository Details

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Occupations

Microbiologists