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scvi-tools
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Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI). Best for advanced modeling, batch effects, multimodal data. For standard analysis pipelines use scanpy.
By tools-only schedule Updated 2/14/2026 Install via CLI
npx skills add https://github.com/tools-only/X-Skills --skill scvi-tools
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