pr

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Create a well-structured GitHub PR with proper branching, testing, formatting, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation, implementation, testing, formatting, committing, and PR creation with comprehensive descriptions.

talmolab By talmolab schedule Updated 2/26/2026

name: pr description: > Create a well-structured GitHub PR with proper branching, testing, formatting, and documentation. Use when the user says "create a PR", "make a PR", "open a pull request", or wants to submit changes for review. Handles the full workflow: branch creation, implementation, testing, formatting, committing, and PR creation with comprehensive descriptions.

Create a GitHub Pull Request

Overview

This skill guides the complete PR workflow from branch creation to PR submission. Follow all steps in order to ensure high-quality, well-documented contributions.

Step 1: Branch Setup

Pull latest main

git checkout main
git pull origin main

Create feature branch

Use a descriptive branch name following the pattern: {type}/{description}

Types:

  • feature/ - New functionality
  • fix/ - Bug fixes
  • refactor/ - Code restructuring
  • docs/ - Documentation updates
  • test/ - Test additions/improvements
git checkout -b feature/descriptive-name

Step 2: Understand the Problem

Before coding, clearly identify:

  1. Core problem: What issue are we solving?
  2. Scope: What files/modules will be affected?
  3. Approach: What's the implementation strategy?
  4. Edge cases: What scenarios need special handling?

If there's an associated GitHub issue, fetch it for context:

gh issue view <issue-number>

Step 3: Implement Changes

  • Make focused, incremental changes
  • Follow existing code patterns and style
  • Add docstrings and comments for complex logic
  • Consider backwards compatibility

Step 4: Write Tests

Location

Tests go in the tests/ directory, mirroring the source structure.

Requirements

  • Cover all new functionality
  • Test edge cases and error conditions
  • Test both success and failure paths
  • Aim for high coverage of changed code

Test file naming

  • test_{module_name}.py for module tests
  • Place in corresponding tests/ subdirectory

Step 5: Format Code

Check GitHub workflows for the project's formatting commands:

# Check .github/workflows/ for exact commands
# Typical formatting for this project:
uv run black sleap_nn tests
uv run ruff check sleap_nn/ --fix

Step 6: Run Tests with Coverage

Run the full test suite with coverage:

uv run pytest -q --maxfail=1 --cov --cov-branch && rm -f .coverage.* && uv run coverage annotate

Check coverage for changed files

The coverage annotate command creates {module_name.py},cover files next to each module.

To find which files changed:

git diff --name-only $(git merge-base origin/main HEAD)

Review the ,cover files for your changed modules to ensure adequate coverage.

Coverage markers in annotated files

Marker Meaning
> Line was executed
! Line was NOT executed (needs test coverage)
- Line is not executable (comments, blank lines)

Step 7: Commit Changes

Commit structure

Make well-structured, atomic commits:

  • Each commit should be a logical unit of work
  • Write clear, descriptive commit messages
  • Use conventional commit format when appropriate

Commit message format

<type>: <short description>

<optional longer description>

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Types: feat, fix, refactor, test, docs, chore

Step 8: Push to GitHub

git push -u origin <branch-name>

Step 9: Create Pull Request

Create the PR

gh pr create --title "<descriptive title>" --body "$(cat <<'EOF'
## Summary
<1-3 bullet points describing the changes>

## Changes Made
- <detailed list of changes>

## Example Usage
```python
# For enhancements, show how to use the new functionality

API Changes

  • <list any API changes, new parameters, removed functionality>

Testing

Design Decisions

Future Considerations

Related Issues

Closes # (if applicable)


🤖 Generated with Claude Code EOF )"


### If updating an existing PR

Fetch current PR description:
```bash
gh pr view <pr-number> --json body -q '.body'

Update PR description:

gh pr edit <pr-number> --body "<new body>"

Fetch associated issue for context

If an issue is linked:

gh issue view <issue-number>

Use issue context to ensure PR description addresses all requirements.

PR Description Checklist

  • Summary clearly explains the "what" and "why"
  • All significant changes are documented
  • Example usage provided for new features
  • API changes explicitly listed
  • Breaking changes highlighted
  • Test coverage described
  • Design decisions explained with reasoning
  • Related issues linked

Quick Reference Commands

# Branch setup
git checkout main && git pull origin main
git checkout -b feature/my-feature

# Format and lint
uv run black sleap_nn tests
uv run ruff check sleap_nn/ --fix

# Test with coverage
uv run pytest -q --maxfail=1 --cov --cov-branch && rm -f .coverage.* && uv run coverage annotate

# Find changed files
git diff --name-only $(git merge-base origin/main HEAD)

# Commit
git add <files>
git commit -m "feat: description"

# Push and create PR
git push -u origin <branch>
gh pr create --title "Title" --body "Description"

# View/edit existing PR
gh pr view <number>
gh pr edit <number> --body "New description"

# View linked issue
gh issue view <number>
Install via CLI
npx skills add https://github.com/talmolab/sleap-nn --skill pr
Repository Details
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article Path SKILL.md
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