pancreas-pathology-specialist

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Comprehensive pancreatic cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition for exocrine pancreas), Whipple/distal-pancreatectomy specimen dissection guidance, axial slicing and margin assessment (SMA, SMV, posterior, anterior, pancreatic neck, bile duct), tumor board summaries, and SNOMED coding. Use when the user uploads or pastes a pancreatic pathology report (Whipple, distal pancreatectomy, total pancreatectomy, pancreatic biopsy) and asks to "check pancreas report", "validate CAP Panc.Exo protocol", "stage this pancreatic cancer", "assess Whipple margins", or any pancreatic-cancer-specific pathology task. Supports .pdf, .docx, .txt input in English and Turkish.

patolojiAI By patolojiAI schedule Updated 5/26/2026

name: pancreas-pathology-specialist description: Comprehensive pancreatic cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition for exocrine pancreas), Whipple/distal-pancreatectomy specimen dissection guidance, axial slicing and margin assessment (SMA, SMV, posterior, anterior, pancreatic neck, bile duct), tumor board summaries, and SNOMED coding. Use when the user uploads or pastes a pancreatic pathology report (Whipple, distal pancreatectomy, total pancreatectomy, pancreatic biopsy) and asks to "check pancreas report", "validate CAP Panc.Exo protocol", "stage this pancreatic cancer", "assess Whipple margins", or any pancreatic-cancer-specific pathology task. Supports .pdf, .docx, .txt input in English and Turkish. license: MIT metadata: version: 1.3.0 author: Serdar Balci

Pancreatic Pathology Specialist

Complete pancreatic cancer pathology workflow toolkit combining compliance checking, staging, margin assessment, and coding.

When to Use This Skill

Use this skill for:

  • Pancreatic cancer pathology report validation
  • Exocrine pancreas carcinoma specimens (Whipple, distal pancreatectomy, total pancreatectomy)
  • CAP/ICCR compliance checking with severity scoring
  • TNM staging calculation (AJCC 8th edition)
  • Complex margin assessment (anterior/posterior surface, SMA, portal vein, bile duct)
  • Whipple specimen dissection guidance
  • Tumor board summary generation
  • SNOMED CT coding assistance

Supported Specimen Types

  • Whipple procedure (pancreaticoduodenectomy)
  • Distal pancreatectomy
  • Total pancreatectomy
  • Enucleation
  • Core needle biopsy

Key Features

  1. Compliance Checking: Validates against CAP Panc.Exo and ICCR Carcinoma of the Exocrine Pancreas protocols
  2. TNM Staging: AJCC 8th edition pancreas staging with pT/pN/M calculation
  3. Margin Assessment: Anterior surface, posterior surface, SMA, portal vein groove, bile duct, pancreatic neck
  4. Whipple Dissection: Step-by-step guidance for proper specimen sampling
  5. Template Generation: Whipple and distal pancreatectomy synoptic templates
  6. Tumor Board Summaries: Concise 3-5 line MDT presentation format
  7. SNOMED Coding: Pancreas-specific code suggestions

Reference Files

When processing reports, reference these files on-demand (DO NOT load at startup):

  • Diagnosis guidelines: references/diagnosis/exocrine_pancreas.md
  • Macroscopy guidelines: references/macroscopy/pancreas_macroscopy.md
  • TNM staging: ../../shared-references/staging/tnm_stage_calculator.md
  • Synoptic templates: ../../shared-references/templates/synoptic_templates.md
  • SNOMED codes: ../../shared-references/coding/snomed_ct_codes.md

Usage Examples

# Validate report compliance
claude "Check this pancreas report using pancreas-pathology-specialist" < report.txt

# Generate staging
claude "What stage is pT2 N1 M0 for pancreas using pancreas-pathology-specialist"

# Create template
claude "Generate Whipple specimen template using pancreas-pathology-specialist"

# Margin interpretation
claude "How to report anterior surface margin 0.5mm using pancreas-pathology-specialist"

Processing Instructions

When analyzing pancreatic pathology reports:

  1. Identify request type (compliance check, staging, template, margin interpretation, summary, coding)
  2. Read relevant reference file on-demand based on request
  3. Process the report using appropriate guidelines
  4. Generate output in requested format
  5. DO NOT load all reference files upfront

Compliance Scoring

Use severity-based weighting:

  • Critical elements (tumor size, grade, margins, SMA margin, nodes): -15 points each
  • Major elements (LVI, PNI, surface involvement, bile duct margin): -5 points each
  • Minor elements (tumor location, distance from margins): -2 points each

Scoring: 90-100 (Compliant) | 70-89 (Minor issues) | 50-69 (Major issues) | <50 (Critical)

Cross-Validation Checks

Always validate:

  • pT category vs tumor size and extension
  • pN category vs positive node count
  • Stage group vs pT/pN/M combination
  • R status vs margin measurements
  • SMA margin vs arterial involvement

Language Support

Supports English and Turkish - detect from user prompt and use appropriate template file.


Note: This is a minimal skill definition. Large reference files are loaded on-demand only when processing requests, not at skill startup.

Install via CLI
npx skills add https://github.com/patolojiAI/pathology-skills-collection --skill pancreas-pathology-specialist
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