nextflow-development

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Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

By nota-america schedule Updated 6/8/2026

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Install via CLI

npx skills add https://github.com/nota-america/forgecat-agent-profiles --skill nextflow-development

Repository Details

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