building-with-zep - SKILL.md Agent Skill

name: building-with-zep description: Guide for building and configuring applications that use Zep — agent memory built on temporal Context Graphs, for use cases that need low-latency retrieval, many users and agents, multi-source ingestion, and governance. Use whenever you are writing or designing code that integrates Zep: adding agent memory or long-term context to an agent or chatbot, ingesting chat/business/document data into a Context Graph, retrieving a Context Block or searching the graph, choosing between user graphs and standalone graphs, defining a custom ontology or custom instructions, or deciding how to evaluate and tune Zep for a use case. Triggers on requests like "add memory to my agent", "integrate Zep", "store this in Zep", "search the Zep graph", "set up a Zep ontology", "how should I structure my Zep graphs", "make my agent remember users". Covers what Zep is, its core concepts, the high-level vs low-level APIs, customization, and how to start simple and benchmark.

Building with Zep

Zep is agent memory — for use cases that require low-latency retrieval, large numbers of users and agents, ingestion from many sources, and governance. This skill teaches you how to reason about Zep and build apps on it correctly — what it is, how its pieces fit together, which API to reach for, when to customize, and how to validate that it works for a given use case.

Read this top-to-bottom before writing Zep code. Pull in the reference files (under references/) when you need exact method signatures, parameters, or code.

All guidance here is for Zep V3 (SDK packages zep-cloud for Python/TypeScript, github.com/getzep/zep-go/v3 for Go). Ignore anything you may know about the legacy V2 Memory API.

Zep has no meaningful free tier — it is a paid product (Subscription and Enterprise plans). Some features noted below are limited to specific plans.

Looking up current details (read first)

This plugin bundles the zep-docs MCP server — Zep's documentation search. Treat it as the source of truth for anything that must be exact or current: method names, parameters, limits, plan availability, and newer features the summaries here may not cover.

Query the zep-docs MCP server first. Use its documentation-search tool to look up the specific guide or API before relying on memory or on the summaries in this skill, whenever precision matters. It covers both the guides and the SDK/API reference.
If the MCP server is unavailable, fall back to the Zep documentation directly:
- Guides: https://help.getzep.com
- SDK / API reference: https://help.getzep.com/sdk-reference

The reference files in this skill are a fast, curated map of the API surface and the judgment around it — not a replacement for the live docs. If this skill and the live docs ever disagree, the live docs win.

1. What Zep does

Zep gives an agent durable, up-to-date memory of users, the business, and work done, and serves it back as ready-to-use context in milliseconds.

The flow is always the same three moves:

Ingest data from any source — chat messages, business records, documents, JSON.
Zep builds a temporal knowledge graph (its Context Graph) of the entities, relationships, and facts in that data, and keeps it current as new data arrives.
Retrieve a token-efficient Context Block (or run targeted graph searches) and drop it into your prompt.

This gives an agent access to relevant prior context across sessions without building and maintaining a separate retrieval pipeline.

The mental model to hold: Zep is not a chat-log store and not a vector database. It extracts structured, time-aware knowledge from whatever you feed it, fuses it into a graph per subject, and returns the slice that matters for the current moment.

2. How Zep is different

When you're deciding whether Zep fits, or explaining it, these are the differentiators that matter:

Many sources, one graph. Chat, documents, JSON, and business events all flow into the same Context Graph and are fused into one coherent picture of a subject. You don't keep separate stores per data type.
Temporal by design. Every fact carries validity timestamps. When new data contradicts an old fact, Zep invalidates the old one and keeps it as history — so you can ask what is true now, or what was true at a past date. This is the key advantage over static GraphRAG and over plain vector search, which have no notion of change over time.
Built for change, not static corpora. Zep is designed for streaming, frequently-updated data and incremental graph updates. Traditional GraphRAG is built for one-time summarization of static documents; reach for Zep when knowledge evolves.
Hybrid retrieval, not similarity alone. Retrieval combines semantic search, full-text (BM25) search, and graph traversal with reranking — capturing conceptual matches, exact keywords, and relationships in one ranked result. It optimizes for recall (give the agent everything relevant) over precision.
Low latency at scale. Sub-200ms (P95) retrieval regardless of graph size or number of graphs, which supports large numbers of users and latency-sensitive applications such as voice agents.
Many users, many agents. Each user gets their own graph; standalone graphs hold shared or domain knowledge. The same memory can be served to whichever agents need it.
Governance. Authorization (RBAC/ABAC), retention policies, audit logging, and provenance (every fact traces to the source episode that produced it) apply across every graph and query. Deployment can be Cloud, Cloud + BYOK, or BYOC (your VPC); SOC 2 Type II and HIPAA BAA are available.

3. Core concepts

You must get these right — most integration mistakes come from misunderstanding what a thread or a graph actually is. Full detail and code in references/concepts.md; the essentials and the common misconceptions:

Concept	What it is	What it is not
User graph	A Context Graph automatically created for one user; fuses all of that user's threads and business data into one picture. The home for agent memory.	Not something you create by hand, and not partitioned by thread.
Standalone graph	A general-purpose graph (`graph_id`) for knowledge about an object or system — shared knowledge bases, product/domain data, runbooks.	Not for personalized user memory (no user node, no user summary). For a user, use a user graph.
Thread	A conversation: an ordered sequence of messages for one user. Adding messages both records history and ingests into the user graph.	Not an isolated conversation store and not the container for facts. Facts are extracted across all threads into the user graph.
Entity (node)	A noun extracted from data — person, account, product, place, concept — with a regenerated narrative summary.	Not where precise claims live (those are facts on edges). Deduplication is automatic; you don't manage node identity.
Edge / fact	A fact is a precise, time-stamped claim ("Emily's account is suspended") stored on an edge between two entities, with `valid_at`/`invalid_at`/`created_at`/`expired_at`.	A fact is not independent of its edge, and not a vector chunk.
Entity summary vs facts	Summaries roll an entity's history into a narrative (depth); facts are granular dated claims (breadth). The Context Block uses both.	A summary is not a fact and is not citable as a precise dated claim.
Episode	The raw ingested artifact (a message, text chunk, or JSON object), stored verbatim alongside what Zep derives from it.	Not the extracted knowledge itself — reach for episodes when you need the exact source wording or a citation.
User summary	One always-on narrative of who the user is, on the user node; included unconditionally in every Context Block.	Not query-filtered and not per-thread; the same baseline regardless of the latest message. Standalone graphs don't have one.
Thread summary	An auto-maintained natural-language summary of one thread's arc (what happened in that conversation). One per thread.	Not a user-wide view (that's the user summary / facts) and not something you trigger manually.
Observation (Flex Plus and Enterprise plans)	A durable, evidence-backed pattern Zep derives across many facts/entities — a decision, commitment, preference, recurring behavior.	Not "just more facts" — it's a cross-entity synthesis, and it's read-only (you can't create or edit observations).

The single most important runtime fact: thread.get_user_context(thread_id=...) returns context from the entire user graph, not just that thread. The thread is used only to figure out what's relevant right now (from its last two messages).

4. Choosing an API: high-level first, low-level when you must

Zep's high-level APIs cover most use cases. Default to the high-level path and only drop down when you have a concrete reason. Full API surface, parameters, scopes, rerankers, and filters are in references/apis.md.

High-level (start here):

thread.get_user_context(thread_id) → returns the Context Block: an optimized, prompt-ready string assembled by Smart Context Assembly (auto search over the whole user graph, based on the last two messages). This is the right answer for most conversational agents. Sub-200ms.
Context templates → same automatic relevance, but your own fixed layout/sections (%{user_summary}, %{edges}, %{entities}, …). Use when you need consistent custom formatting across threads.
graph.search(..., scope="auto") → the recommended entry point for standalone graphs (and for non-thread queries). Retrieves across all data shapes, cross-scope reranks, packs to a character budget, returns a ready-to-use context string.

Low-level (when the high-level path isn't enough):

graph.search with a specific scope (edges, nodes, episodes, observations, thread_summaries), plus rerankers (rrf default, mmr, cross_encoder, episode_mentions, node_distance), search_filters (entity/edge types, properties, dates, metadata), and BFS from recent episodes. Use for UI features, tool-call retrieval where the LLM decides when to search, or precise control.
Advanced/manual context construction → run several searches and assemble the string yourself. Maximum control, most code. This is the required pattern for retrieving from standalone graphs into a custom block.

Decision shortcut:

Conversational agent, user memory → thread.get_user_context.
Need fixed sections but automatic relevance → context template.
Domain/standalone graph → graph.search(scope="auto"), or manual construction for a custom block.
LLM-driven "search when needed" → expose graph.search as a tool.
Need one result type, a filter, or a specific reranker → scoped graph.search.

5. Customization: ontology and instructions

Customization improves extraction quality, but it is prompt engineering — iterate, don't front-load it. Full APIs, limits, and code in references/customization.md.

Custom ontology (graph.set_ontology) — define your own entity types and edge types (max 10 each per scope, ≤10 fields each). Good for: focusing extraction on the entities/relationships that matter in your domain, and enabling precise type-filtered retrieval. Recommended for most production use cases. Not good for: modeling everything up front, or as a substitute for good data — many use cases are fully served by default entities + node summaries + facts. Custom attributes on types are an advanced feature; you often don't need them. Design entity types as nouns and edge types as verbs/relationships, and start with a few generic types.
Custom instructions (graph.add_custom_instructions, Enterprise) — describe your domain (terminology, concepts) so Zep interprets data better during extraction. Applied automatically on ingest. Good for: specialized vocabularies (legal, healthcare, internal jargon). Not for: defining entity/relationship types — that's what ontology is for.
User summary instructions (user.add_user_summary_instructions) — steer what the user summary captures (short, question-shaped prompts). Good for: shaping the always-on user baseline. Note they don't apply to Batch-API-ingested data.

The unifying rule: ontology = the shape of the graph (types); instructions = how to interpret your domain. Both are scoped project-wide or per user/graph.

6. Best practices: start simple, then benchmark

Start simple. Get the basic loop working first — create user → create thread → add_messages → get_user_context — with default ontology and the default Context Block. Don't add custom ontology, templates, or low-level search until you've measured a concrete gap. See references/getting-started.md.
Ingestion is asynchronous. Graph building takes time (seconds per message). Don't expect a fact to be retrievable the instant you add it; design for eventual availability and check status when it matters.
Feed data well. Use thread.add_messages for conversation, graph.add for documents/JSON/business data (≤10,000 chars/call — chunk larger). Prepare JSON: split large/deeply-nested objects, keep each piece understandable in isolation. Always pass real user names (and ideally last name + email) so the graph resolves identity correctly.
Optimize latency only when needed. Reuse one client instance; use return_context=True on add_messages to fold retrieval into the same call; run ingest and search concurrently; warm the user cache on login. Relevant for voice/real-time agents.
Benchmark for your use case before tuning. Don't guess whether retrieval is good enough — measure it. Zep ships an evaluation harness: write 3–5 example interactions, generate test conversations + questions, ingest, and grade context completeness (Zep's job) separately from answer accuracy (also your LLM's job). Iterate on ontology and search strategy against that suite, and keep it as a regression test. Full workflow in references/evaluation.md.
Lead with the high-level path. Most "Zep isn't returning the right thing" problems are solved by better data and the default Context Block, not by jumping to low-level graph.search tuning.

Reference files

references/getting-started.md — install, client init, the quick-start loop, adding messages / business data / JSON, batch ingestion, ingestion status.
references/concepts.md — every core concept in depth, with what-it-is / what-it-isn't and retrieval code.
references/apis.md — the full retrieval and search API surface: Context Block, templates, graph.search scopes, rerankers, filters, BFS, direct getters.
references/customization.md — ontology, custom instructions, user summary instructions, fact triplets, pattern detection, defaults and limits.
references/evaluation.md — the evaluation harness, benchmarking methodology, and what to measure.
references/governance.md — RBAC, audit logging, deployment models, compliance.

When you need an exact endpoint or a detail not covered here, look it up rather than guessing: query the zep-docs MCP server first, and fall back to the SDK/API reference at https://help.getzep.com/sdk-reference and the guides at https://help.getzep.com. This skill captures the shape and the judgment, not every parameter — the live docs are authoritative.