name: literature-research
description: Search academic literature and perform deep research reviews. Use when user asks to search PubMed, find academic papers, or do literature reviews.
Literature Research
Goal
Search academic databases and perform comprehensive literature reviews.
Scripts
./scripts/pubmed_literature_search.py - Search PubMed./scripts/literature_deep_review.py - Deep review with Claude
Usage
Search PubMed
python3 ./scripts/pubmed_literature_search.py \
--query "machine learning cancer diagnosis" \
--limit 50 \
--output .tmp/papers.json
Deep Review
python3 ./scripts/literature_deep_review.py \
--input .tmp/papers.json \
--output .tmp/review.md
Output
- JSON file with paper metadata
- Markdown review with key findings, themes, gaps
Schema
Inputs
| Name |
Type |
Required |
Description |
query |
string |
Yes |
Research query (e.g., 'machine learning cancer diagnosis') |
limit |
integer |
No |
Max papers to fetch (default: 50) |
Outputs
| Name |
Type |
Description |
papers_file |
file_path |
JSON file with paper metadata |
review_file |
file_path |
Markdown review with key findings, themes, gaps |
Credentials
| Name |
Source |
ANTHROPIC_API_KEY |
.env |
Cost
Free (PubMed API) + Claude for review
By