interproscan-pipeline - SKILL.md Agent Skill

name: InterProScan Pipeline description: Predict protein domain families and functional annotation using InterProScan. Input a protein sequence and receive domain architecture, Gene Ontology (GO) terms, pathway annotations, and cross-references to protein databases including Pfam, SMART, PANTHER, and CDD. metadata: scpToolId: interproscan_pipeline scpCategory: life_science scpType: compute_tool provider: 上海人工智能实验室

InterProScan Pipeline

Overview

Performs comprehensive protein domain and functional annotation by scanning against multiple protein family databases using InterProScan methodology.

MCP Invocation

toolId: interproscan_pipeline
action: annotate
params:
  sequence?: string   # Amino acid sequence (FASTA format or raw)
  databases?: string[] # Optional: specific databases to search
  go_annotation?: boolean # Optional: include GO term annotation

Local Description

网页端调用: https://scphub.intern-ai.org.cn/skill/interproscan_pipeline

下载说明: 本地为 SKILL.md 资源定义，工具执行由 SCP Hub 远程服务提供。需配置 openteam.json → integrations.scpHub.apiKey。

Output

Domain architectures with coordinates
Database matches (Pfam, SMART, PANTHER, CDD, InterPro)
GO term annotations (Biological Process, Molecular Function, Cellular Component)
KEGG/Reactome pathway associations
Protein family classification