381,784 Collected SKILL.md files

Explore AI Agent Skills & Claude Prompts

Discover open-source agent skills for Claude Code, Codex, ChatGPT, and any tool that uses SKILL.md.

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nextflow-io
Showing 12 of 17 skills
nextflow-io

validate-training-materials

by nextflow-io
star 249

Run comprehensive validation and review checks including heading numbering, TODO/FIXME comments, Nextflow script conventions, orphaned files, admonition syntax, lesson structure, formatting, content accuracy, and teaching effectiveness. Use when validating, reviewing, or checking training materials quality, lesson quality, or before committing changes.

navigation main article SKILL.md
schedule Updated 1 month ago
nextflow-io

run-tutorial-walkthrough

by nextflow-io
star 249

Walk through a training tutorial as a user would, progressively building examples exactly as instructed, running all commands, and verifying results against solutions. Use when testing tutorials end-to-end or validating that instructions are correct and complete.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

stop-preview

by nextflow-io
star 249

Stop a running MkDocs preview server. Use when port 8000 is busy, switching tasks, or done editing documentation.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

test-nextflow-example-script

by nextflow-io
star 249

Test a Nextflow script by running it, verifying outputs, testing resume functionality, and comparing results with documentation. Use when validating that example scripts work correctly and match their documentation.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

add-exercise

by nextflow-io
star 249

Add an interactive exercise with solution to an existing lesson. Creates properly formatted exercise and solution admonition blocks. Use when a lesson needs hands-on practice.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

check-code-block-highlights

by nextflow-io
star 249

Verify that hl_lines attributes in markdown code blocks correctly highlight the intended lines. Use when reviewing documentation with code examples, especially Before/After comparisons, or when highlights seem incorrect.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

check-inline-code-formatting

by nextflow-io
star 249

Review inline code in markdown files for proper formatting and syntax highlighting. Check for missing backticks on CLI flags, filenames, and code elements. Verify that inline syntax highlighting (#!groovy) is used appropriately. Use when reviewing documentation or quiz questions.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

docker-environment-setup

by nextflow-io
star 249

Set up a Docker container for running Nextflow training examples. Handles basic setup, Docker-outside-of-Docker (DooD) for containerized processes, ARM Mac platform emulation, and troubleshooting. Use when you need to run Nextflow examples in a consistent environment.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

find-todo-and-fixme-comments

by nextflow-io
star 249

Search markdown files, Nextflow scripts, and config files for TODO/FIXME comments, categorize by priority, and provide actionable recommendations. Use when you need to identify pending work or track technical debt.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

new-lesson

by nextflow-io
star 249

Create a new numbered lesson page within an existing training module. Use when adding a new topic like '05_error_handling.md' to an existing course.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

new-module

by nextflow-io
star 249

Scaffold a complete new training module with standard directory structure, index, orientation, lessons, survey, and next-steps files. Use when creating a new course like 'Advanced Pipelines' or a new domain module.

navigation main article SKILL.md
schedule Updated 4 months ago
nextflow-io

preview

by nextflow-io
star 249

Start local MkDocs preview server to view training material changes. Use when editing documentation, checking formatting, or testing how content renders before committing.

navigation main article SKILL.md
schedule Updated 4 months ago
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Browse Agent Skills by Occupation

23 major groups · 867 SOC occupations

Browse by Category

Explore agent skills organized by their primary use case

SKILLMD / CREATORS AND OCCUPATION CATEGORIES

Explore the agent skills ecosystem by occupation and creator

SkillMD is not just a keyword search box. It is an open map that organizes public skills by occupation, creator, and repository, helping you see which workflows, judgment criteria, and domain habits people are writing for AI agents.

Then follow creators and GitHub repositories back to the source: compare the skills a team maintains, whether the repo is active, and how the README frames the work before you open, install, or reuse anything.

Use it three ways: learn an unfamiliar field by occupation, study how creators organize skills, then use source context to decide what is worth opening or reusing.

01 Map a field

Browse 23 occupation groups and 867 SOC roles to learn what skills exist in adjacent domains and how they break down real work.

02 Follow creators

Use creator and repository pages to inspect maintained skill collections, recent updates, and source context before trusting a result.

03 Search with sources

Search 1.7M+ collected skills, then use occupation tags, creators, and GitHub source context to decide what is worth opening.

Start with the occupation map, then follow creators and repositories back to real code. SkillMD helps explain why a skill is worth opening, not only what it is named.

SEO KNOWLEDGE HUB & TECHNICAL OVERVIEW

Standardizing Agent Capabilities with SKILL.md and Model Context Protocol (MCP)

In the rapidly evolving landscape of artificial intelligence, LLM agents (Large Language Model agents) have transitioned from simple text predictors to autonomous problem solvers. To orchestrate complex, multi-step agentic workflows, developers require a standardized format to specify agent capabilities, prompt instructions, system rules, and database bindings. This is where SKILL.md and the Model Context Protocol (MCP) have emerged as standard developer paradigms. SkillMD serves as the central directory for indexing, exploring, and sharing these critical agent configurations.

Our open-source registry currently tracks over 1.7 million collected SKILL.md configurations and system prompts. By compiling agent configurations from active developers on GitHub, we bridge the gap between prompt engineering research and production execution. Whether you are building agents with Anthropic's Claude Code, OpenAI's GPT-4, Google's Gemini, or local models using Ollama and LlamaIndex, standardized skill definitions ensure your agents behave predictably across different runtime environments.

What is the Model Context Protocol (MCP)?

The Model Context Protocol (MCP) is an open-source standard designed to connect LLMs to data sources, developer tools, and external environments. MCP establishes a bidirectional communication channel between client applications (like Cursor, Claude Desktop, or custom agent systems) and servers hosting data or capabilities. Standardizing instructions via SKILL.md enables LLMs to query databases, read local files, execute terminal commands, and integrate third-party APIs. SkillMD allows you to find ready-to-run MCP servers and prompt instructions for various occupations and technical tasks.

The Structure of a Professional SKILL.md File

A valid SKILL.md configuration is designed to be easily read by humans and parsed by LLMs. It contains precise system instructions, trigger conditions, required parameters, and execution examples. Below is the typical architectural blueprint of a professional agent skill:

  • Metadata & Core Scope: Declares the name of the skill, author details, target models, and a description of the capability.
  • Triggers & Intent Detection: Details semantic triggers that help the agent decide when to invoke this skill.
  • System Prompts: Explicit system-level instructions that direct the agent's behavior, personality, safety guardrails, and formatting preferences.
  • Capabilities & Tools: Lists the files, databases, or APIs the agent must access to complete the tasks.
  • Few-Shot Examples: Demonstrates real inputs and outputs, helping the model generalize behavior through in-context learning.

Optimizing Agent Workflows for Modern LLMs

Writing effective agent skills requires deep knowledge of prompt engineering. With the release of advanced reasoning models like Claude 3.5 Sonnet, ChatGPT o1, and DeepSeek-V3, prompt templates must focus on structured thinking. Developers are encouraged to use XML tags (e.g., <thought>, <context>, and <rules>) to isolate execution boundaries. Standardized prompts prevent agents from suffering from context drift, ensuring that long-running tasks remain aligned with the initial system parameters.

Exploring by SOC Occupations and Creator Profiles

What makes SkillMD unique is its taxonomy. Instead of simple text search, we parse and organize files according to the Standard Occupational Classification (SOC) system. This means you can discover skills written for Computer and Mathematical roles, Business and Financial operations, Legal, Design, and and Educational Instruction fields. By tracking creator profiles, developers can study how different teams organize their custom instructions, compare version updates, and fork public configs for specialized enterprise use cases.

SkillMD operates as a high-performance index running on a fast Go backend and a highly responsive Astro SSR frontend. All search queries execute in milliseconds, featuring smart debouncing to prevent multiple API requests while keeping user data secure. Join our community of developers to standardize your AI agent instructions and optimize your LLM prompting workflows today.

8 QUESTIONS

Frequently Asked Questions

A practical guide to agent skills: what they are, how to inspect them, and how SkillMD helps you explore the ecosystem.